McKinney EF, Lee JC, Jayne DR, Lyons PA and Smith KGC. “T-cell exhaustion, costimulation and clinical outcome in autoimmunity and infection.” Nature, 2015; 523: 612- 616; PMC4623162.

Biasci D, Lee JC, Noor NM, Pombal DR, Hou M, Lewis N, Ahmad T, Hart A, Parkes M, McKinney EF, Lyons PA, and Smith KGC. “A blood-based prognostic biomarker in inflammatory bowel disease.”  Gut, 2019; 10.1136/gutjnl-2019-318343.

McKinney EF, Lyons PA, Carr EJ, Hollis JL, Jayne DRW, Willcocks LC, Koukoulaki M, Hatton A, MacAry PA, et al. and Smith KGC. “A CD8+ T cell transcription signature predicts prognosis in autoimmune disease.” Nature Medicine, 2010; 16:586-589; PMC3504359.

Lee JC, Lyons PA, McKinney EF, Sowerby JM, Carr EJ, Bredin F, Rickman HM, Ratlamwala H, Hatton A, et al. and Smith KGC. “Gene expression profiling of CD8+ T cells predicts prognosis in patients with Crohn disease and ulcerative colitis.” Journal of Clinical Investigation, 2011; 121:4170-4179; PMC3196314.

Richard AC, Peters JE, Lee JC, Vahedi G, Schaffer AA, Siegel RM, Lyons PA and Smith KGC. “Targeted genomic analysis reveals widespread autoimmune disease association with regulatory variants in the TNF superfamily cytokine signalling network.” Genome Medicine, 2016; 8:76

Richard AC, Peters JE, Savinykh N, Lee JC, Hawley ET, Meylan F, Siegel RM, Lyons PA and Smith KGC. “Reduced monocyte and macrophage TNFSF15/TL1A expression is associated with susceptibility to inflammatory bowel disease”. PLoS Genetics, 2018; 14.9:e1007458

Bashford-Rogers RJM, Bergamaschi L, McKinney EF, Pombal DC, Mescia F, Lee JC, Thomas DC, Flint SM, Kellam P, Jayne DRW, Lyons PA and Smith KGC. “B cell receptor repertoire analysis in six immune-mediated diseases”. Nature 2019; under revision

Espéli M, Bashford-Rogers RJM, Sowerby JM, Alouche N, Wong L, Denton AE, Linterman MA and Smith KGC. “FcgRIIb differentially regulates pre-immune and germinal center B cell tolerance in mouse and human.” Nature Communications, 2019;10:1970; PMC6488660.

Thaventhiran JED, Allen HL, Burren OS, et al., Ouwehand WL, Thrasher AJ and Smith KGC. “Whole Genome Sequencing of Primary Immunodeficiency reveals a role for common and rare variants in coding and non-coding sequences.” Nature 2019;under revision and BioRxiv doi: https://doi.org/10.1101/499988.

Thomas DC, Clare S, Sowerby JM, Pardo M, Juss JK, Goulding DA, van der Weyden L, Storisteanu D, Prakash A, Espéli M, Flint S, Lee JC, Hoenderdos K, Kane L, Harcourt K, Mukhopadhyay S, Umrania Y, Antrobus R, Nathan JA, Adams DJ, Bateman A, Choudhary JS, Lyons PA, Condliffe AM, Chilvers ER, Dougan G and Smith KGC (2017). “Eros is a novel transmembrane protein that controls the phagocyte respiratory burst and is essential for innate immunity.” J Exp Med. 214(4):1111-1128. doi: 10.1084/jem.20161382

Lee JC, Biasci D, Roberts R, Gearry RB, Mansfield JC, Ahmad T, Prescott NJ, Satsangi J, Wilson DC, Jostins L, Anderson CA; UK IBD Genetics Consortium., Traherne JA, Lyons PA, Parkes M and Smith KGC (2017). “Genome-wide association study identifies distinct genetic contributions to prognosis and susceptibility in Crohn’s disease.” Nat Genet. 49(2):262-268. doi: 10.1038/ng.3755

Peters JE, Lyons PA, Lee JC, Richard AC, Fortune MD, Newcombe PJ, Richardson S and Smith KGC (2016). “Insight into genotype-phenotype associations through eQTL mapping in multiple cell types in health and immune-mediated disease.” PLoS Genet. 12(3):e1005908. doi: 10.1371/journal.pgen.1005908

Linterman, MA, Denton, AE, Divekar, DP, Zvetkova, I, Kane, L, Ferreira, C, Veldhoen, M, Clare, S, Dougan G, Espéli, M, and Smith, KGC (2014). CD28 expression is required after T cell priming for helper T cell responses and protective immunity to infection. ELIFE, 3. doi:10.7554/eLife.03180

Wallin , EF, Jolly, EC, Suchánek, O, Bradley, JA, Espéli, M, Jayne, DRW, Linterman, MA, and Smith, KGC (2014). Human T follicular helper and T follicular regulatory cell maintenance is independent of germinal centers. Blood, 124(17), 2666-74. doi:10.1182/blood-2014-07-585976

Richard, AC, Lyons, PA, Peters, JE, Biasci, D, Flint, SM, Lee, JC, and Smith, KGC (2014). Comparison of gene expression microarray data with count-based RNA measurements informs microarray interpretation. BMC Genomics, 15, 649. doi:10.1186/1471-2164-15-649

Lee, JC, Espéli, M, Anderson, CA, Linterman, MA, Pocock, JM, Williams, NJ, et al, and Smith, KGC (2013). Human SNP links differential outcomes in inflammatory and infectious disease to a FOXO3-regulated pathway. Cell, 155(1), 57-69. doi:10.1016/j.cell.2013.08.034

Mok, Y, Schwierzeck, V, Thomas, DC, Vigorito, E, Rayner, TF, Jarvis, LB, et al, and Smith, KGC (2013). MiR-210 is induced by Oct-2, regulates B cells, and inhibits autoantibody production. J Immunol, 191(6), 3037-3048. doi:10.4049/jimmunol.1301289

Espéli, M, Clatworthy, MR, Bökers, S, Lawlor, KE, Cutler, AJ, Köntgen, F, et al, and Smith, KGC (2012). Analysis of a wild mouse promoter variant reveals a novel role for FcγRIIb in the control of the germinal center and autoimmunity.. J Exp Med, 209(12), 2307-2319. doi:10.1084/jem.20121752

Lyons, PA, Rayner, TF, Trivedi, S, Holle, JU, Watts, RA, Jayne, DR, et al, and Smith, KGC (2012). Genetically distinct subsets within ANCA-associated vasculitis.. N Engl J Med, 367(3), 214-223. doi:10.1056/NEJMoa1108735

Linterman, MA, Pierson, W, Lee, SK, Kallies, A, Kawamoto, S, Rayner, TF, et al, Smith, KGC and Vinuesa, CG (2011). Foxp3+ follicular regulatory T cells control the germinal center response. Nat Med, 17(8), 975-982. doi:10.1038/nm.2425

Lee, JC, Lyons, PA, McKinney, EF, Sowerby, JM, Carr, EJ, Bredin, F, et al, and Smith, KGC (2011). Gene expression profiling of CD8 + T cells predicts prognosis in patients with Crohn disease and ulcerative colitis. Journal of Clinical Investigation, 121(10), 4170-4179. doi:10.1172/JCI59255

McKinney, EF, Lyons, PA, Carr, EJ, Hollis, JL, Jayne, DR, Willcocks, LC, et al, and Smith, KGC (2010). A CD8+ T cell transcription signature predicts prognosis in autoimmune disease. Nat Med, 16(5), 586-591. doi:10.1038/nm.2130